This file describes the other files in the directory. In the following description we use the abbreviations : par = pseudoautosonal region, non-par = non- pseudoautosonal region.

NB. the HapMap files included here are derived from HapMap rel#21 (NCBI Build 35).

chrX.example.gen - example genotype file from non-par region of the X chromosome

chrX.example.sample - example sample file that contains a column named 'sex' which details the sex of the individuals in the genotype file. 1 = male, 2 = female.

genotypes_chrX_CEU_r21_nr_fwd_non-par_phased_by_snp_no_mono - CEU HapMap haplotypes from non-par region of the X chromosome

 genotypes_chrX_CEU_r21_nr_fwd_non-par_legend.txt - legend file for the CEU HapMap haplotypes from non-par region of the X chromosome

genetic_map_chrX_non-par.txt - genetic map for the non-par region of the X chromosome
              
genotypes_chrX_CEU_r21_nr_fwd_par1_phased_by_snp_no_mono - CEU HapMap haplotypes from 1st par region of the X chromosome

genotypes_chrX_CEU_r21_nr_fwd_par1_legend.txt -  legend file for the CEU HapMap haplotypes from 1st par region of the X chromosome

genetic_map_chrX_par1.txt - genetic map for the 1st par region of the X chromosome

Affy500k_chrX_non-par.strand - strand file for the Affy500k chip in Build 35 co-ordinates

                                    

