Oxford Mathematical Genetics Group Publications
• Sorted by Date • Classified by Research Category • Classified by Author Last Name •
• 2006 • 2005 • 2004 • 2003 • 2002 • 2001 • 2000 • 1999 • 1998 •
2006
- Hanchard, Neil A, Rockett, Kirk A, C. Spencer, Coop, Graham, Pinder, Margaret,
Jallow, Muminatou, Kimber, Martin, G. McVean, Mott, Richard, and Kwiatkowski,
Dominic P. Screening for recently selected alleles by analysis of human haplotype similarity. Am J Hum Genet,
78(1):153–159, Jan 2006.
Details Download: [HTML] - R. Bowden and D. McGeoch. Herpes Simplex Viruses, Marcel Dekker
Inc, New York, 2006.
Details Download: (unavailable) - Kraft, Christian, Stack, Allison, Josenhans, Christine, Niehus, Eike, Dietrich, Guido, Correa, Pelayo, Fox, James G, D.
Falush, and Suerbaum, Sebastian. Genomic Changes during Chronic Helicobacter pylori Infection. J Bacteriol,
188(1):249–254, Jan 2006.
Details Download: [pdf] - J. Marchini, D. Cutler, N. Patterson, M. Stephens, E. Eskin, E. Halperin,
S. Lin, Z. S. Qin, H. M. Munro, G. Abecasis, and P. Donnelly for the International HapMap Consortium. A comparison of phasing
algorithms for trios and unrelated individuals. Am J Hum Genet, 78, 2006.
Details Download: [HTML] - D. J. Wilson and G. McVean. Estimating diversifying selection andfunctional
constraint in the presence of recombination. Genetics, 172:1411–1425, 2006.
Details Download: [HTML] - W. Wong, R. Sainudiin, and R. Nielsen. Identification of physicochemical selective pressure on protein encoding nucleotide
sequences. BMC Bioinformatics, 2006.
Details Download: (unavailable)
2005
- Jolley, K A, Wilson, D J, Kriz, P, G. McVean, and Maiden, M C J. The influence
of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis.
Mol Biol Evol, 22(3):562–569, Mar 2005.
Details Download: [pdf] - Goriely, Anne, G. McVean, van Pelt, Ans M M, O'Rourke, Anthony W, Wall, Steven
A, de Rooij, Dirk G, and Wilkie, Andrew O M. Gain-of-function amino acid substitutions drive positive selection of FGFR2
mutations in human spermatogonia. Proc Natl Acad Sci U S A, 102(17):6051–6056, Apr 2005.
Details Download: [pdf] - M. Birkner, J. Blath, M. Capaldo, A. Etheridge, M. Moehle, J. Schweinsberg, and A. Wakolbinger. Alpha-stable branching
and Beta-coalescents. Electronic Journal of Probability, 10(9):303–325, 2005.
Details Download: [pdf] - J. Blath and P. Moerters. Thick points of super-Brownian motion.. Probability Theory and Related Fields, 131:604–630,
2005.
Details Download: [HTML] - R. Bowden, H. Sakaoka, R. Ward, and P.
Donnelly. Global patterns of HSV-1 molecular diversity and inferences of human migrations. Infection, Genetics
and Evolution, 6:63–74, 2005.
Details Download: [pdf] - Griffiths, R. C. and Lessard, S. Ewens' sampling formula and related formulae: Combinatorial proofs, extensions to variable
population size and applications to ages of alleles. Theor. Popul. Biol., 68:167–177, 2005.
Details Download: [HTML] - Altshuler, David, Brooks, Lisa D, Chakravarti, Aravinda, Collins, Francis S, Daly, Mark J, and P.
Donnelly. A haplotype map of the human genome. Nature, 437(7063):1299–1320, Oct 2005.
Details Download: [HTML] - Dingle, Kate E, Colles, Frances M, D. Falush, and Maiden, Martin C J. Sequence
typing and comparison of population biology of Campylobacter coli and Campylobacter jejuni. J Clin Microbiol, 43(1):340–347,
Jan 2005.
Details Download: [pdf] - Jeffreys, Alec J, Neumann, Rita, Panayi, Maria, S. Myers, and P.
Donnelly. Human recombination hot spots hidden in regions of strong marker association. Nat Genet, 37(6):601–606,
Jun 2005.
Details Download: [HTML] - Shrivastava, Jaya, Qian, Bao Zhen, G. Mcvean, and Webster, Joanne P. An
insight into the genetic variation of Schistosoma japonicum in mainland China using DNA microsatellite markers. Mol
Ecol, 14(3):839–849, Mar 2005.
Details Download: [pdf] - De Iorio, M., Griffiths, R. C., Lebois, R., and Rousset, F.. Stepwise mutation likelihood computation by sequential importance
sampling in subdivided population models. Theor. Popul. Biol., 68:41–53, 2005.
Details Download: [HTML] - J. Marchini, L. Cardon, and P.
Donnelly. Genome-wide strategies for detecting multiple loci influencing complex diseases. Nature Genetics,
37:413–417, 2005.
Details Download: [pdf] - G. McVean, C. Spencer, and
R. Chaix. Perspectives on Human Genetic Variation from the HapMap Project. PLoS Genet, 1(4):e54, Oct 2005.
Details Download: [pdf] - G. McVean and N. Cardin. Approximating the coalescent with recombination.
Philos Trans R Soc Lond B Biol Sci, 360(1459):1387–1393, Jul 2005.
Details Download: [HTML] - S. Myers, Bottolo, Leonardo, Freeman, Colin, G.
McVean, and P. Donnelly. A fine-scale map of recombination
rates and hotspots across the human genome. Science, 310(5746):321–324, Oct 2005.
Details Download: [HTML] - Bisharat, Naiel, Cohen, Daniel I, R. Harding, D.
Falush, Crook, Derrick W, Peto, Tim, and Maiden, Martin C. Hybrid Vibrio vulnificus. Emerg Infect Dis, 11(1):30–35,
Jan 2005.
Details Download: [pdf] - Atkinson, Q.D., Nicholls G.K. Welch, D.J., and Gray, R.D.. From words to dates:water into wine, mathemagic or phylogenetic
inference?. Transactions of the Philological Society, 103:193–219, 2005.
Details Download: [HTML] - Clark, T., De Iorio, M., Griffiths, R. C., and Farrall, M.. Finding associations in dense genetic maps: a genetic algorithm
approach. Hum Hered, 60:97–108, 2005.
Details Download: [HTML] - David Welch, Geoff K. Nicholls, Allen Rodrigo, and Wiremu Solomon. Integrating
Genealogy and Epidemiology: The Ancestral Infection and Selection Graph as a Model for Reconstructing Host Virus Histories.
Theoretical Population Biology, 68:65–75, 2005.
Details Download: [HTML] - W. Winckler, S. Myers, D. Richter, R. Onofrio, G. McDonald, R. Bontrop, G. McVean, S. Gabriel, D. Reich, P.
Donnelly, and D. Altshuler. Comparison of Fine-Scale Recombination Rates in Humans and Chimpanzees. Science,
Feb 2005.
Details Download: [HTML]
2004
- N. Bisharat, D. W. Crook, J. Leigh, R. M. Harding, P. N. Ward, T. J. Coffey,
M. C. Maiden, T. Peto, and N. Jones. Hyperinvasive neonatal group B streptococcus has arisen from a bovine ancestor.
J Clin Microbiol., 42(5):2161–7, 2004.
Details Download: [pdf] - R. Bowden, H. Sakaoka, P.
Donnelly, and R. Ward. High recombination rate in herpes simplex virus type 1 natural populations suggests significant
co-infection. Infection, Genetics and Evolution, 4:115–123, 2004.
Details Download: [HTML] - The International HapMap Consortium. Integrating ethics and science in the International HapMap Project. Nature
Reviews Genetics, 5:467–475, 2004.
Details Download: [pdf] - G. Coop and R. C. Griffiths. Ancestral inference on gene trees under selection.
Theor. Popul. Biol., 66:219–232, 2004.
Details Download: [HTML] - P. Fearnhead, R. M. Harding, J. A. Schneider, S.
Myers, and P. Donnelly. Application of coalescent
methods to reveal fine-scale rate variation and recombination hotspots. Genetics, 167:2067–2081, 2004.
Details Download: [HTML] - R. M. Harding and G. McVean.
A structured ancestral population for the evolution of modern humans.. Current Opinion in Genetics & Development,
14(6):667–674, 2004.
Details Download: [HTML] - A. V. Harter, K. A. Gardner, D. Falush, D. L. Lentz, R. A. Bye, and L. H.
Rieseberg. Origin of extant domesticated sunflowers in Eastern North America. Nature, 430:201–205, 2004.
Details Download: [HTML] - M. De Iorio and R. C. Griffiths. Importance sampling on coalescent histories.
I. Adv. Appl. Probab., 36:417–433, 2004.
Details Download: [HTML] - M. De Iorio and R. C. Griffiths. Importance sampling on coalescent histories.
II. Subdivided population models. Adv. Appl. Probab., 36:434–454, 2004.
Details Download: [HTML] - D. R. Langbehn, R. R. Brinkmann, D. Falush, J. S. Paulsen, and M. R. Hayden.
A new model for the prediction of the age of onset and penetrance for Huntington's disease based on CAG length. Clinical
Genetics, 65:267–277, 2004.
Details Download: [HTML] - J. Marchini, L. Cardon, M. Phillips, and P.
Donnelly . The effects of human population structure on large genetic association studies. Nature Genetics,
36:512–517, 2004.
Details Download: [pdf] - G. McVean, S. Myers, S. Hunt,
P. Deloukas, D. Bentley, and P. Donnelly. The fine-scale
structure of recombination rate variation in the human genome. Science, 304(5670):581–584, 2004.
Details Download: [pdf] - C. Spencer and G. Coop. SelSim: A program to simulate population genetic
data withselection and recombination. Bioinformatics, 20(18):3673–5, 2004.
Details Download: [HTML] - X. Wirth, Wang, B. Linz, R. P. Novick, K. J. Lum, M. J. Blaser, G. Morelli, D.
Falush, and M. Achtman. Distinguishing human ethic groups by means of sequences from Helicobacter pylori: lessons from
Ladkh. PNAS, 101:4646–4651, 2004.
Details Download: [pdf]
2003
- The International HapMap Consortium. The International HapMap project. Nature, 426:789–796, 2003.
Details Download: [pdf] - A. Goriely, G. A. T. McVean, M. Rojmyer, B. Ingermarsson, and A. Wilkie. Evidence
for selective advantage of pathogenic FGFR2mutations in the male germ line. Science, 301:643–646, 2003.
Details Download: [pdf] - R. C. Griffiths and S. Tavaré. The genealogy of a neutral mutation.
In P. J. Green, N. L. Hjort, and S. Richardson, editors, Highly Structured Stochastic Systems, Oxford Statistical Science
Series, pp. 393–413, Oxford University Press, Oxford, 2003.
Details Download: [HTML] - R. C. Griffiths. The frequency spectrum of a mutation, and its age, in a
general diffusion model. Theor. Popul. Biol., 64:241–251, 2003.
Details Download: [HTML] - R. C. Griffiths. Discussion on the paper 'Inferences from DNA data:
population histories, evolutionary processes and forensic match probabilities' by I.A.
Wilson, M.E. Weale, and D.J. Balding. J. R. Statist. Soc. A., 166:192–193, 2003.
Details Download: [HTML] - A. Helgason, G. Nicholson, K. Stefánsson,, and P. Donnelly.
A reassessment of genetic diversity in Icelanders: strong evidence from multiple loci for relative homogeneity caused by
genetic drift. Ann. Hum. Genet., 67:281–297, 2003.
Details Download: [HTML] - S. R. Myers and R. C. Griffiths.
Bounds on the minimum number of recombination events in a sample history. Genetics, 163(1):375–394, 2003.
Details Download: [pdf] - M. Stephens and P. Donnelly. Ancestral inference in population
genetics models with selection (with discussion). Aust. N.Z. J. of Stats., 45:395–430, 2003.
Details Download: [HTML] - M. Stephens and P. Donnelly. A Comparison of Bayesian
methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet., 73:1162–1169, 2003.
Details Download: [pdf] - M. P. H. Stumpf and G. A. T. McVean. Estimating recombination rates from
population genetic data. Nature Revs Genet., 4:959–968, 2003.
Details Download: [pdf]
2002
- H.-J. Bandelt, L. Quintana-Murci, A. Salas, and V. Macaulay . The fingerprint of phantom mutations in mtDNA data. Am.
J. Hum. Genet., 71:1150–1160, 2002.
Details Download: [pdf] - H.-J. Bandelt, V. Macaulay, and M. Richards. What molecules can't tell us about the spread of languages and the Neolithic..
In P. Bellwood and C. Renfrew, editors, Examining the farming/language dispersal hypothesis, McDonald Institute for
Archaeological Research, Cambridge, 2002.
Details Download: (unavailable) - F. Cruciani, P. Santolamazza, P. Shen, V. Macaulay, P. Moral, A. Olckers, D. Modiano, S. Holmes, G. Destro-Bisol, V. Coia,
D. C. Wallace, P. J. Oefner, A. Torroni, L. L. Cavalli-Sforza, R. Scozzari, and P. A. Underhill. A back migration from
Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y chromosome haplotypes. Am. J. Hum. Genet.,
70:1197–1214, 2002.
Details Download: [pdf] - P. Fearnhead and P. Donnelly. Approximate likelihood
methods for estimating local recombination rates (with discussion). J. Roy. Stat. Soc. B., 64:657–680, 2002.
Details Download: (unavailable) - Y. Gilad, N. Rosenberg, M. Przeworski, D. Lancet, and K. Skorecki. Evidence for positive selection and population structure
at the human MAO-A gene. PNAS, 99:862–867, 2002.
Details Download: [pdf] - R. C. Griffiths. Ancestral inference from gene trees. In M. Veuille
and M. Slatkin, editors, Modern Developments in Theoretical Population Genetics: the Legacy of Gustave
Malécot, Oxford Biology Readers, pp. 94–117, Oxford University Press, New York, 2002.
Details Download: [HTML] - R. C. Griffiths. Discussion on the paper 'Assessing population differentiation
and isolation from single--nucleotide polymorphism data' by G. Nicholson, A.V. Smith, F. Jónsson,
Ó. Gústafsson, K. Stefánsson, and P. Donnelly. J. R. Statist. Soc. B., 64:742–743,
2002.
Details Download: [HTML] - J. Marchini and L. R. Cardon. Discussion of Nicholson et al. (2002) Assessing
population differentiation and isolation from single-nucleotide polymorphism data. J. Roy. Stat. Soc. B., pp. 740–1,
2002.
Details Download: (unavailable) - G. McVean, P. Awadalla, and P. Fearnhead. A coalescent-based method for
detecting and estimating recombinaton form gene sequences. Genetics, 160:1231–1241, 2002.
Details Download: [pdf] - G. A. T. McVean. A genealogical interpretation of linkage disequilibrium.
Genetics, 162:987–991, 2002.
Details Download: [HTML] - G. Nicholson, A. V. Smith, F. Jonsson, O. Gustafsson, K. Steffanson, and P.
Donnelly. Assessing population differentiation and isolation from single-nucleotide polymorphism data. J. Roy.
Stat. Soc. B., 64:695–715, 2002.
Details Download: (unavailable) - M. Przeworski. The signature of positive selection at randomly chosen loci. Genetics, 160:1179–1189, 2002.
Details Download: [pdf] - D. E. Reich, S. F. Schaffner, M. J. Daly, G. McVean, J. C. Mullikin, J. M.
Higgins, D. J. Richter, E. S. Lander, and D. Altshuler. Human genome sequence variation and the influence of gene history,
mutation and recombination. Nature Genetics, 32:135–142, 2002.
Details Download: [HTML] - M. Richards, V. Macaulay, A. Torroni, and H.-J. Bandelt. In search of geographical patterns in European mtDNA. Am.
J. Hum. Genet., 71:1168–1174, 2002.
Details Download: [pdf] - M. Richards, V. Macaulay, and H.-J. Bandelt. Analyzing genetic data in a model-based framework: inferences about European
prehistory. In P. Bellwood and C. Renfrew, editors, Examining the farming/language dispersal hypothesis, McDonald
Institute for Archaeological Research, Cambridge, 2002.
Details Download: (unavailable) - A. Salas, M. Richards, T. De La Fe, M.-V. Lareu, B. Sobrino, P. Sánchez-Diz, V. Macaulay, and Á. Carracedo. The making
of the African mtDNA landscape.. Am. J. Hum. Genet., 71:1082–1111, 2002.
Details Download: [pdf] - A. C. Stone, R. C. Griffiths, S. L. Zegura, and M. F. Hammer. High levels
of Y-chromosome nucleotide diversity in the genus \it \MakeUppercasePan. PNAS, 99:43–49, 2002.
Details Download: [pdf]
2001
- P. Andolfatto and M. Przeworski. Regions of lower recombination harbor more rare variants in African populations of Drosophila
melanogaster. Genetics, 158:657–665, 2001.
Details Download: [pdf] - M. Bahlo and R. C. Griffiths. Coalescence time for two genes from a subdivided
population. J. Math. Biol., 43:397–410, 2001.
Details Download: [HTML] - H.-J. Bandelt, P. Lahermo, M. Richards, and V. Macaulay. Detecting errors in mtDNA data by phylogenetic analysis. Int.
J. Legal Med., 115:64–69, 2001.
Details Download: [pdf] - D. Charlesworth, B. Charlesworth, and G. McVean. Genome sequences and evolutionary
biology, a two-way interaction. Trends Ecol. Evol., 16:235–242, 2001.
Details Download: (unavailable) - A. Cooper, A. Rambaut, V. Macaulay, E. Willerslev, A. J. Hansen, and C. Stringer. Human origins and ancient human DNA..
Science, 292:1655–1656, 2001.
Details Download: [HTML] - P. Donnelly, P. Joyce, and M. Nordborg. Likelihoods and
simulation methods for a class of non-neutral population genetics models. Genetics, 159:853–867, 2001.
Details Download: [pdf] - P. Donnelly and R. Foley, editors. Genes, Fossils
and Behaviour: an Integrated Approach to Human Evolution., NATO Science Series, IOS Press, Amsterdam, 2001.
Details Download: (unavailable) - P. Fearnhead. Perfect simulation of population genetic models with selection. Theor. Pop. Biol., 59:263–279,
2001.
Details Download: [pdf] - P. Fearnhead and P. Donnelly. Estimating recombination
rates from population genetic data. Genetics, 159:1299–1318, 2001.
Details Download: [pdf] - R. C. Griffiths. Ancestral inference from gene trees. In P.
Donnelly and R. A. Foley, editors, Genes, Fossils, and Behaviour: an Integrated Approach to Human Evolution, NATO
Science Series A, Life Sciences, pp. 137–172, IOS Press, Amsterdam, 2001.
Details Download: [HTML] - A. J. Hansen, E. Willerslev, C. Wiuf, T. Mourier, and P. Arctander. Statistical evidence for miscoding lesions in ancient
DNA templates. Mol. Biol. Evol., 18:262–265, 2001.
Details Download: [HTML] - DN Kakoola, J Sheldon, N Byabazaire, RJ Bowden, E Katongole-Mbidde, TF Schulz
TF, and AJ Davison. Recombination in human herpesvirus-8 strains from Uganda and evolution of the K15 gene. Journal
of General Virology, 82:2393–2404, 2001.
Details Download: [HTML] - G. A. T. McVean and J. Vieira. Inferring parameters of mutation, selection
and demography from patterns of synonymous site evolution in Drosophila. Genetics, pp. 245–257, 2001.
Details Download: [HTML] - G. A. T. McVean. What do patterns of variability reveal about mitochondrial
recombination?. Heredity, 87:613–620, 2001.
Details Download: [HTML] - L. Pereira, V. Macaulay, A. Torroni, R. Scozzari, M. J. Prata, and A. Amorim. Prehistoric and historic traces in the mtDNA
of Mozambique: insights into the Bantu expansions and the slave trade. Ann. Hum. Genet., 65:439–458, 2001.
Details Download: (unavailable) - J. Pritchard and P. Donnelly. Case-Control Studies of
Association in Structured or Admixed Populations.. Theor. Pop. Biol., 60:227–237, 2001.
Details Download: (unavailable) - J. K. Pritchard and M. Przeworski. Linkage disequilibrium in humans: models and data. Am. J. Hum. Gen., pp.
1–14, 2001.
Details Download: [pdf] - M. Przeworski and J. D. Wall. Why is there so little intragenic linkage disequilibrium in humans?. Genet. Res.,
77:143–151, 2001.
Details Download: (unavailable) - M. Przeworski, J. D. Wall, and P. Andolfatto. Recombination and the frequency spectrum in Drosophila melanogaster and D.
simulans. Mol. Biol. Evol., 18:291–298, 2001.
Details Download: [HTML] - M. Richards and V. Macaulay. The mitochondrial gene tree comes of ages. Am. J. Hum. Genet., 68:1315–1320,
2001.
Details Download: [pdf] - R. Scozzari, F. Cruciani, Pangrazio, A., Santolamazza, P., Vona, G., Moral, P., Latini, V., Varesi, L., Memmi, M. M., Romano,
V., De Leo, G., Gennarelli, M., Jaruzelska, J., Villems, R., Parik, J., Macaulay, V., and A. Torroni. Human Y-chromosome
variation in the western Mediterranean area: implications for the peopling of the region. Hum. Immun., 2001.
Details Download: [pdf] - M. Stephens, Smith, N.J., and P. Donnelly . A new statistical
method for haplotype reconstruction from population data. Am. J. Hum. Genet., 68:978–989, 2001.
Details Download: [pdf] - K. Strimmer, Wiuf, C., and V. Moulton. Recombination analysis using directed graphical models. Mol. Biol. Evol.,
2001.
Details Download: [HTML] - A. Torroni, Rengo, C., Guida, V., Cruciani, F., Sellitto, D., Coppa, A., Luna Calderon, F., Simionati, B., Valle, G., Richards,
M., Macaulay, V., and R. Scozzari. Do the four clades of the mtDNA haplogroup L2 evolve at different rates?. Am.
J. Hum. Genet., 69:1348–1356, 2001.
Details Download: [pdf] - A. Torroni, Bandelt, H.?J., Macaulay, V., Richards, M., Cruciani, F., Rengo, C., Martinez?Cabrera, V., Villems, R., Kivisild,
T., Metspalu, E., Parik, J., Tolk, H.?V., Tambets, K., Forster, P., Karger, B., Francalacci, P., Rudan, P., Janicijevic, B.,
Rickards, O., Savontaus, M.?L., Huoponen, K., Laitinen, V., Koivumäki, S., Sykes, B., Hickey, E., Novelletto, A., Moral, P.,
Sellitto, D., Coppa, A., Al?Zaheri, N., Santachiara?Benerecetti, A. S., Semino, O., and R. Scozzari. A signal and from
human mtDNA, of postglacial recolonization in Europe.. Am. J. Hum. Genet., 69:844–852, 2001.
Details Download: [pdf] - C. Wiuf. Rare alleles and selection. Theor. Pop. Biol., 59:287–296, 2001.
Details Download: [pdf] - C. Wiuf. Do $\Delta$F508 heterozygotes have a selective advantage?. Genet. Res., 78:41–47, 2001.
Details Download: (unavailable) - C. Wiuf. Recombination in human mitchondrial DNA?. Genetics, 159:749–756, 2001.
Details Download: [pdf] - C. Wiuf, Christensen, T., and J. Hein.. A simulation study of the reliability of recombination detection methods. Mol.
Biol. Evol., 18:1929–1939, 2001.
Details Download: [HTML]
2000
- M. Bahlo and R. C. Griffiths. Inference from gene trees in a subdivided
population. Theor. Popul. Biol., 57:79–95, 2000.
Details Download: [HTML] - H.-J. Bandelt, Macaulay, V., and M. Richards. Median networks: speedy construction and greedy reduction, one simulation,
and two case studies from human mtDNA. Mol. Phylogenet. Evol., 16:8–28, 2000.
Details Download: [HTML] - A. D. Barbour, S. N. Ethier, and R. C. Griffiths. A transition function
expansion for a diffusion model with selection. Ann. Appl. Probab., 10:123–162, 2000.
Details Download: [HTML] - P. Donnelly and E. Rodrigues. Convergence to stationarity
in the Moran model. J. Appl. Probab., 37:705–717, 2000.
Details Download: (unavailable) - P. Donnelly, Evans, S. N., Fleischmann, K. Kurtz, T. G.,
and X. Zhou. Continuum-sites stepping-stone models, coalescing exchangeable partitions, and random trees. Ann. Probab.,
28:1063–1110, 2000.
Details Download: (unavailable) - R. Gonser, Donnelly, P., Nicholson, G., and A. Di Rienzo. Microsatellite mutations and inferences about human evolution.
Genetics, 154:1793–1807, 2000.
Details Download: [pdf] - R. C. Griffiths. Discussion on the paper 'Inference in molecular population
genetics' by M. Stephens and P. Donnelly. J. R. Statist. Soc. B., 62:638–639, 2000.
Details Download: [HTML] - J. Hein, Wiuf, C., Mĝller, M. B., Knudsen, B., and G. Wibling. Statistical alignment: computational properties, homology
testing and goodness-of-fit. J. Mol. Biol., 302:265–279, 2000.
Details Download: [pdf] - J. K.Pritchard, Stephens, M., Rosenberg N. A., and P. Donnelly.
Association mapping in structured populations. Am. J. Hum. Genet., 67:170–181, 2000.
Details Download: [pdf] - J. K. Pritchard, Stephens, M., and P. Donnelly. Inference
of population structure using multilocus genotype data. Genetics, 155:945–959, 2000.
Details Download: [pdf] - M. Richards and V. Macaulay. Genetic data and the colonization of Europe: genealogies and founders. In C. Renfrew and
K. Boyle, editors, Archaeogenetics: DNA and the Population Prehistory of Europe, pp. 139–151, McDonald Institute
for Archaeological Research, Cambridge, 2000.
Details Download: (unavailable) - M. Richards, Macaulay, V., Hickey, E., Vega, E., Sykes, B., Guida, V., Rengo, C., Sellitto, D., Cruciani, F., Kivisild, T.,
Villems, R., Thomas, M., Rychkov, S., Rychkov, O., Rychkov, Y., Gölge, M., Dimitrov, D., Hill, E., Bradley, D., Romano, V.,
Calì, F., Vona, G., Demaine,A., Papiha, S., Triantaphyllidis, C., Stefanescu, G., Hatina, J., Belledi, M., Di Rienzo, A.,
Novelletto, A., Oppenheim, A., Nĝrby, S., Santachiara-Benerecetti, S., Scozzari, R., Torroni, A., and H.-J. Bandelt. Tracing
European founder lineages in the Near Eastern mtDNA pool. Am. J. Hum. Genet., 67:1251–1276, 2000.
Details Download: [pdf] - S. Sigurdardottir, Helgason, A., Gulcher, J., Stefanson, K., and P.
Donnelly. The mutation rate in the human mtDNA control region. Am. J. Hum. Genet., 66:1599–1609, 2000.
Details Download: [pdf] - M. Stephens and P. Donnelly. Inference in molecular population
genetics. J. R. Statist. Soc. B, 62:605–635, 2000.
Details Download: (unavailable) - C. Wiuf. A coalescence approach to gene conversion. Theor. Pop. Biol., 57:357–367, 2000.
Details Download: [pdf] - C. Wiuf and J. Hein. The coalescent with gene conversion.. Genetics, 155:451–462, 2000.
Details Download: [pdf] - C. Wiuf. On the genealogy of a sample of neutral rare alleles. Theor. Pop. Biol., 58:61–75, 2000.
Details Download: [pdf]
1999
- P. Donnelly. The coalescent and microsatellite variability.
In Goldstein, D. and C. Schlotterer, editors, Microsatellites: Evolution and Applications , pp. 116–128, Oxford
University Press, Oxford, 1999.
Details Download: (unavailable) - P. Donnelly and T. G. Kurtz. Particle representations
for measure-valued population models. Ann. Probab., 27:166–205, 1999.
Details Download: (unavailable) - P. Donnelly and R. D. Friedman. DNA database searches
and the legal consumption of scientific evidence. Michigan Law Review, pp. 931–984, 1999.
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